Latest

Publications (December)

Park SW, Sun K, Champredon D, Li M, Bolker BM, Earn DJD, Weitz JS, Grenfell BT, Dushoff J. (2021) Forward-looking serial intervals correctly link epidemic growth to reproduction numbers. Proc Natl Acad Sci U S A. 118(2):e2011548118

Joshua S. Weitz, Sang Woo Park, Ceyhun Eksin, Jonathan Dushoff (2020) Awareness-driven behavior changes can shift the shape of epidemics away from peaks and toward plateaus, shoulders, and oscillations. Proceedings of the National Academy of Sciences Dec 2020, 117 (51) 32764-32771

RM Brooker, AL Seyfferth, A Hunter, JM Sneed, DL Dixson, ME Hay Human proximity suppresses fish recruitment by altering mangrove-associated odour cues. Scientific reports 10 (1), 1-9

Conan Y Zhao, Yiqi Hao, Yifei Wang, John J Varga, Arlene A Stecenko, Joanna B Goldberg, Sam P Brown. (2020) Microbiome data enhances predictive models of lung function in people with cystic fibrosis. The Journal of Infectious Diseases, jiaa655

Publications (November)

Sheyda Azimi, LM Wheldon, NJ Oldfield, DAA Ala’Aldeen, KG Wooldridge (2020) A role for fibroblast growth factor receptor 1 in the pathogenesis of Neisseria meningitidis. Microbial Pathogenesis, Volume 149, Article 104534

CS Clements, AS Burns, FJ Stewart, ME Hay (2020) Parasite-host ecology: the limited impacts of an intimate enemy on host microbiomes. Animal Microbiome 2 (1), 1-13                         

Rachel Wilson, Anya Hopple, Malak M Tfaily, Cassandra Zalman, Eric Johnston, Caitlin Petro, Max Kolton, Tianze Song, Karis J McFarlane, Stephen Sebestyen, Natalie Griffiths, Randall K Kolka, Christopher W Schadt, Paul J Hanson, Jason Keller, Scott D Bridgham, Jeff Chanton, Joel E Kostka (2020) Plant Exudate-Soil Interactions Linked to Delayed Mineralization of Subsurface C Stores After 3 Years of Experimental Warming. AGU Fall Meeting 2020

Samantha J Mascuch, Sara Fakhretaha-Aval, Jessica C Bowman, Minh Thu H Ma, Gwendell Thomas, Bettina Bommarius, Chieri Ito, Liangjun Zhao, Gary P Newnam, Kavita R Matange, Hem R Thapa, Brett Barlow, Rebecca K Donegan, Nguyet A Nguyen, Emily G Saccuzzo, Chiamaka T Obianyor, Suneesh C Karunakaran, Pamela Pollet, Brooke Rothschild-Mancinelli, Santi Mestre-Fos, Rebecca Guth-Metzler, Anton V Bryksin, Anton S Petrov, Mallory Hazell, Carolyn B Ibberson, Petar I Penev, Robert G Mannino, Wilbur A Lam, Andrés J Garcia, Julia Kubanek, Vinayak Agarwal, Nicholas V Hud, Jennifer B Glass, Loren Dean Williams, Raquel L Lieberman (2020) A blueprint for academic laboratories to produce SARS-CoV-2 quantitative RT-PCR test kits. Journal of Biological Chemistry 295 (46), 15438-15453

JT Pentz, P Márquez-Zacarías, GO Bozdag, A Burnetti, PJ Yunker, E Libby, William C. Ratcliff (2020). Ecological advantages and evolutionary limitations of aggregative multicellular development. Current Biology 30 (21), 4155-4164. e6

Aroon Chande, Seolha Lee, Mallory Harris, Quan Nguyen, Stephen J Beckett, Troy Hilley, Clio Andris, Joshua S Weitz (2020). Real-time, interactive website for US-county-level COVID-19 event risk assessment. Nature Human Behaviour, 1-7

Publications (October)

Sheyda Azimi, LM Wheldon, NJ Oldfield, DAA Ala’Aldeen, KG Wooldridge (2020) A role for fibroblast growth factor receptor 1 in the pathogenesis of Neisseria meningitidis. Microbial Pathogenesis, Volume 149, Article 104534

Vanderwoude Jelly, Fleming Derek, Azimi Sheyda, Trivedi Urvish, Rumbaugh Kendra P. and Diggle Stephen P (2020) The evolution of virulence in Pseudomonas aeruginosa during chronic wound infection. Proc. R. Soc. B.28720202272

C Rose, AJ Medford, CF Goldsmith, T Vegge, J Weitz, AA Peterson (2020) Population Susceptibility Variation and Its Effect on Contagion Dynamics. arXiv preprint arXiv:2009.09150

KY Inagaki, MG Pennino, SR Floeter, ME Hay, GO Longo (2020) Trophic interactions will expand geographically but be less intense as oceans warm. Global Change Biology

AD Klementiev, Z Jin, M Whiteley (2020) Micron Scale Spatial Measurement of the O2 Gradient Surrounding a Bacterial Biofilm in Real Time. mBio 11 (5)

Publications (September)

SE Lester, A Rassweiler, S J McCoy, A K Dubel, M K Donovan, MW Miller, SD Miller, BI Ruttenberg, J F Samhouri, Mark E Hay (2020)Caribbean reefs of the Anthropocene: Variance in ecosystem metrics indicates bright spots on coral depauperate reefs. Global Change Biology 26 (9), 4785-4799

Om Prakash, Stefan J Green, Pooja Singh, Puja Jasrotia, Joel E Kostka (2020) Stress-related ecophysiology of members of the genus Rhodanobacter isolated from a mixed waste contaminated subsurface. Frontiers of Environmental Science & Engineering 15 (2), 1-9

Micah Dettweiler, Lewis Marquez, Michelle Lin, Anne M Sweeney-Jones, Bhuwan Khatri Chhetri, Daniel V Zurawski, Julia Kubanek, Cassandra L Quave (2020) Pentagalloyl glucose from Schinus terebinthifolia inhibits growth of carbapenem-resistant Acinetobacter baumannii. Scientific Reports 10 (1), 1-12

David Yanni, Shane Jacobeen, Pedro Márquez-Zacarías, Joshua S Weitz, William C Ratcliff, Peter J Yunker (2020) Topological constraints in early multicellularity favor reproductive division of labor. eLife 9, e54348

Jennifer T Pentz, Pedro Márquez-Zacarías, G Ozan Bozdag, Anthony Burnetti, Peter J Yunker, Eric Libby, William C Ratcliff (2020)Ecological advantages and evolutionary limitations of aggregative multicellular development. Cell Press

Noor Mruwat, Michael CG Carlson, Svetlana Goldin, François Ribalet, Shay Kirzner, Yotam Hulata, Stephen J Beckett, Dror Shitrit, Joshua S Weitz, E Virginia Armbrust, Debbie Lindell (2020) A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances. The ISME Journal, 1-14